wsiprocess
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wsiprocess package
wsiprocess.annotationparser
wsiprocess.converters
wsiprocess
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A
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B
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C
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D
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E
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F
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G
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I
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L
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M
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N
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O
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P
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R
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S
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T
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V
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W
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X
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Y
A
add_base_text() (wsiprocess.converters.wsiprocess_to_voc.VOCTree method)
add_categories() (wsiprocess.converters.wsiprocess_to_coco.ToCOCOConverter method)
add_class() (wsiprocess.annotation.Annotation method)
add_main_branches() (wsiprocess.converters.wsiprocess_to_voc.VOCTree method)
add_objects() (wsiprocess.converters.wsiprocess_to_voc.VOCTree method)
add_sub_branches() (wsiprocess.converters.wsiprocess_to_voc.VOCTree method)
add_text() (wsiprocess.converters.wsiprocess_to_voc.VOCTree method)
Annotation (class in wsiprocess.annotation)
annotation (wsiprocess.annotationparser.wsidissector_parser.AnnotationParser attribute)
(wsiprocess.patcher.Patcher attribute)
annotation_cover_patch() (wsiprocess.patcher.Patcher method)
annotation_groups (wsiprocess.annotationparser.ASAP_parser.AnnotationParser attribute)
AnnotationLabelError
AnnotationParser (class in wsiprocess.annotationparser.ASAP_parser)
(class in wsiprocess.annotationparser.wsidissector_parser)
annotations (wsiprocess.annotationparser.ASAP_parser.AnnotationParser attribute)
annotations_to_json() (wsiprocess.converters.wsiprocess_to_coco.ToCOCOConverter method)
B
base_mask() (wsiprocess.annotation.Annotation method)
base_masks() (wsiprocess.annotation.Annotation method)
C
classes (wsiprocess.annotationparser.ASAP_parser.AnnotationParser attribute)
(wsiprocess.annotationparser.wsidissector_parser.AnnotationParser attribute)
(wsiprocess.patcher.Patcher attribute)
(wsiprocess.rule.Rule attribute)
convert() (wsiprocess.converters.wsiprocess_to_coco.ToCOCOConverter method)
(wsiprocess.converters.wsiprocess_to_voc.ToVOCConverter method)
(wsiprocess.converters.wsiprocess_to_yolo.ToYOLOConverter method)
Converter (class in wsiprocess.converter)
corner_on_patch() (wsiprocess.patcher.Patcher method)
D
detect_type() (in module wsiprocess.annotationparser.parser_utils)
dot_to_bbox() (wsiprocess.annotation.Annotation method)
E
exclude_coords() (wsiprocess.annotation.Annotation method)
exclude_masks() (wsiprocess.annotation.Annotation method)
export_mask() (wsiprocess.annotation.Annotation method)
export_masks() (wsiprocess.annotation.Annotation method)
export_thumb_mask() (wsiprocess.annotation.Annotation method)
export_thumb_masks() (wsiprocess.annotation.Annotation method)
export_thumbnail() (wsiprocess.slide.Slide method)
extract_patches (wsiprocess.patcher.Patcher attribute)
(wsiprocess.verify.Verify attribute)
F
filename (wsiprocess.annotationparser.wsidissector_parser.AnnotationParser attribute)
filepath (wsiprocess.patcher.Patcher attribute)
filestem (wsiprocess.patcher.Patcher attribute)
(wsiprocess.verify.Verify attribute)
find_bbs() (wsiprocess.patcher.Patcher method)
find_masks() (wsiprocess.patcher.Patcher method)
finished_sample (wsiprocess.patcher.Patcher attribute)
(wsiprocess.verify.Verify attribute)
from_image() (wsiprocess.annotation.Annotation method)
G
get_annotation_params() (wsiprocess.converters.wsiprocess_to_coco.ToCOCOConverter method)
get_image_params() (wsiprocess.converters.wsiprocess_to_coco.ToCOCOConverter method)
get_image_paths() (wsiprocess.converters.wsiprocess_to_yolo.ToYOLOConverter method)
get_mini_patch_parallel() (wsiprocess.patcher.Patcher method)
get_patch() (wsiprocess.patcher.Patcher method)
get_patch_parallel() (wsiprocess.patcher.Patcher method)
get_random_sample() (wsiprocess.patcher.Patcher method)
get_ratio() (wsiprocess.converters.wsiprocess_to_coco.ToCOCOConverter method)
get_save_as() (wsiprocess.converters.wsiprocess_to_coco.ToCOCOConverter method)
get_thumbnail() (wsiprocess.slide.Slide method)
getargs() (wsiprocess.converters.wsiprocess_to_coco.ToCOCOConverter method)
(wsiprocess.converters.wsiprocess_to_voc.ToVOCConverter method)
(wsiprocess.converters.wsiprocess_to_yolo.ToYOLOConverter method)
I
include_masks() (wsiprocess.annotation.Annotation method)
iterator (wsiprocess.patcher.Patcher attribute)
L
last_x (wsiprocess.patcher.Patcher attribute)
last_y (wsiprocess.patcher.Patcher attribute)
M
magnification (wsiprocess.slide.Slide attribute)
magnification() (wsiprocess.verify.Verify method)
main_masks() (wsiprocess.annotation.Annotation method)
make_dir() (wsiprocess.verify.Verify static method)
make_dirs() (wsiprocess.converters.wsiprocess_to_coco.ToCOCOConverter method)
(wsiprocess.verify.Verify method)
make_foreground_mask() (wsiprocess.annotation.Annotation method)
make_images() (wsiprocess.converters.wsiprocess_to_yolo.ToYOLOConverter method)
make_labels() (wsiprocess.converters.wsiprocess_to_yolo.ToYOLOConverter method)
make_link_to_images() (wsiprocess.converters.wsiprocess_to_coco.ToCOCOConverter method)
make_masks() (wsiprocess.annotation.Annotation method)
make_output() (wsiprocess.converters.wsiprocess_to_coco.ToCOCOConverter method)
make_paths() (wsiprocess.converters.wsiprocess_to_yolo.ToYOLOConverter method)
make_template() (wsiprocess.converters.wsiprocess_to_voc.VOCTree method)
make_tree() (wsiprocess.converters.wsiprocess_to_voc.ToVOCConverter method)
makedirs() (wsiprocess.converters.wsiprocess_to_voc.ToVOCConverter method)
(wsiprocess.converters.wsiprocess_to_yolo.ToYOLOConverter method)
mask_coords (wsiprocess.annotationparser.ASAP_parser.AnnotationParser attribute)
(wsiprocess.annotationparser.wsidissector_parser.AnnotationParser attribute)
masks (wsiprocess.patcher.Patcher attribute)
merge_include_coords() (wsiprocess.annotation.Annotation method)
method (wsiprocess.patcher.Patcher attribute)
(wsiprocess.verify.Verify attribute)
MissCombinationError
mkdirs() (wsiprocess.converters.wsiprocess_to_voc.ToVOCConverter method)
move_to_test() (wsiprocess.converters.wsiprocess_to_voc.ToVOCConverter method)
N
no_patches (wsiprocess.patcher.Patcher attribute)
(wsiprocess.verify.Verify attribute)
O
o_height (wsiprocess.patcher.Patcher attribute)
o_width (wsiprocess.patcher.Patcher attribute)
offset_x (wsiprocess.patcher.Patcher attribute)
offset_y (wsiprocess.patcher.Patcher attribute)
on_annotation (wsiprocess.patcher.Patcher attribute)
on_foreground (wsiprocess.patcher.Patcher attribute)
on_params() (wsiprocess.verify.Verify method)
OnParamError
P
p_area (wsiprocess.patcher.Patcher attribute)
p_height (wsiprocess.patcher.Patcher attribute)
p_width (wsiprocess.patcher.Patcher attribute)
parse_ratio() (wsiprocess.converters.wsiprocess_to_yolo.ToYOLOConverter method)
patch_on_annotation() (wsiprocess.patcher.Patcher method)
patch_on_foreground() (wsiprocess.patcher.Patcher method)
Patcher (class in wsiprocess.patcher)
PatchSizeTooSmallError
path (wsiprocess.annotationparser.ASAP_parser.AnnotationParser attribute)
(wsiprocess.annotationparser.wsidissector_parser.AnnotationParser attribute)
(wsiprocess.slide.Slide attribute)
R
read_annotation() (wsiprocess.annotation.Annotation method)
read_last_data() (wsiprocess.converters.wsiprocess_to_coco.ToCOCOConverter method)
read_mask_coord() (wsiprocess.annotationparser.ASAP_parser.AnnotationParser method)
read_mask_coords() (wsiprocess.annotationparser.ASAP_parser.AnnotationParser method)
(wsiprocess.annotationparser.wsidissector_parser.AnnotationParser method)
read_result_file() (wsiprocess.converters.wsiprocess_to_voc.ToVOCConverter method)
(wsiprocess.converters.wsiprocess_to_yolo.ToYOLOConverter method)
read_rule (wsiprocess.rule.Rule attribute)
read_rule() (wsiprocess.rule.Rule method)
remove_dup_in_results() (wsiprocess.patcher.Patcher method)
rename_path() (wsiprocess.converters.wsiprocess_to_yolo.ToYOLOConverter method)
result (wsiprocess.patcher.Patcher attribute)
Rule (class in wsiprocess.rule)
S
save_data() (wsiprocess.converters.wsiprocess_to_coco.ToCOCOConverter method)
save_patch_result() (wsiprocess.patcher.Patcher method)
save_results() (wsiprocess.patcher.Patcher method)
save_to (wsiprocess.patcher.Patcher attribute)
(wsiprocess.verify.Verify attribute)
set_properties() (wsiprocess.slide.Slide method)
set_size() (wsiprocess.converters.wsiprocess_to_voc.VOCTree method)
show_bounding_box() (in module wsiprocess.utils)
show_mask_on_patch() (in module wsiprocess.utils)
side_on_patch() (wsiprocess.patcher.Patcher method)
SizeError
sizes() (wsiprocess.verify.Verify method)
Slide (class in wsiprocess.slide)
slide (wsiprocess.patcher.Patcher attribute)
(wsiprocess.slide.Slide attribute)
SlideLoadError
start_sample (wsiprocess.patcher.Patcher attribute)
(wsiprocess.verify.Verify attribute)
T
to_bb() (wsiprocess.patcher.Patcher method)
to_coco() (wsiprocess.converter.Converter method)
to_jpg() (wsiprocess.converters.wsiprocess_to_voc.ToVOCConverter method)
to_voc() (wsiprocess.converter.Converter method)
to_xml() (wsiprocess.converters.wsiprocess_to_voc.VOCTree method)
to_yolo() (wsiprocess.converter.Converter method)
ToCOCOConverter (class in wsiprocess.converters.wsiprocess_to_coco)
ToVOCConverter (class in wsiprocess.converters.wsiprocess_to_voc)
ToYOLOConverter (class in wsiprocess.converters.wsiprocess_to_yolo)
V
Verify (class in wsiprocess.verify)
VOCTree (class in wsiprocess.converters.wsiprocess_to_voc)
W
wsi_height (wsiprocess.patcher.Patcher attribute)
(wsiprocess.slide.Slide attribute)
wsi_width (wsiprocess.patcher.Patcher attribute)
(wsiprocess.slide.Slide attribute)
wsiprocess.annotation (module)
wsiprocess.annotationparser.ASAP_parser (module)
wsiprocess.annotationparser.parser_utils (module)
wsiprocess.annotationparser.wsidissector_parser (module)
wsiprocess.converter (module)
wsiprocess.converters.wsiprocess_to_coco (module)
wsiprocess.converters.wsiprocess_to_voc (module)
wsiprocess.converters.wsiprocess_to_yolo (module)
wsiprocess.error (module)
wsiprocess.patcher (module)
wsiprocess.rule (module)
wsiprocess.slide (module)
wsiprocess.utils (module)
wsiprocess.verify (module)
WsiProcessError
X
x_lefttop (wsiprocess.patcher.Patcher attribute)
Y
y_lefttop (wsiprocess.patcher.Patcher attribute)
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