wsiprocess.annotationparser¶

wsiprocess.annotationparser.ASAP_parser¶

class wsiprocess.annotationparser.ASAP_parser.AnnotationParser(path)¶

Annotation Parser for ASAP.

Parameters:	path (str) – Path to the annotation file.

path¶

Path to the annotation file.

Type:	str

annotations¶

List of etree Elements.

Type:	list

annotation_groups¶

List of etree Elements.

Type:	list

classes¶

List of classes defined with ASAP.

Type:	list

mask_coords¶

Coordinates of the masks.

Type:	dict

read_mask_coord(cls)¶

Parse the coordinates of the mask.

Parameters:	cls (str) – Target annotation class name.

wsiprocess.annotationparser.parser_utils.detect_type(path)¶

Detect the type of input file.

Returns:	One of {“ASAP”, “WSIDissector”, “Empty”}
Return type:	file_type (str)

class wsiprocess.annotationparser.wsidissector_parser.AnnotationParser(path)¶

Annotation parser for WSIDissector

Parameters:	path (str) – Path to the annotation file.

path¶

Path to the annotation file.

Type:	str

annotation¶

Annotation data loaded as json file.

Type:	dict

filename¶

Name of the targeted whole slide image file.

Type:	str

classes¶

List of the names of the classes.

Type:	list

mask_coords¶

Coordinates of the masks.

Type:	dict