wsiprocess.converters

wsiprocess.converters.wsiprocess_to_coco

Converter to COCO style.

wsiprocess_to_coco is convert helper which convert the wsiprocess output for COCO object detection format. Only available for “detection” method, but works when extracting patches and after extraction.

class wsiprocess.converters.wsiprocess_to_coco.ToCOCOConverter(params=False)

Converter class.

add_categories(annotation, cls)

annotations_to_json()

convert()

get_annotation_params(annotation, classes, file_name, slidestem, x, y, width, height, image_id, annotation_id)

get_image_params(file_name, slidestem, x, y, width, height, image_id)

get_ratio()

get_save_as()

getargs()

make_dirs()

make_link_to_images()

make_output()

read_last_data()

save_data()

wsiprocess.converters.wsiprocess_to_voc

Converter to VOC style.

wsiprocess_to_voc is convert helper which convert the wsiprocess output for VOC object detection format. Only available for “detection” method, but works when extracting patches and after extraction.

class wsiprocess.converters.wsiprocess_to_voc.ToVOCConverter(params=False)

Converter class.

convert()

getargs()

make_tree()

makedirs()

mkdirs(subdirectory)

move_to_test()

If ratio has only two parameters like “8:2”, trainval.txt and test.txt would be generated. If ratio has 3 params like “8:1:1”, trainval.txt, val.txt and text.txt would be generated.

read_result_file()

to_jpg(src, dst)

class wsiprocess.converters.wsiprocess_to_voc.VOCTree(root, save_to, result, patch_width, patch_height)

add_base_text()

add_main_branches()

add_objects()

add_sub_branches()

add_text(branch, text)

make_template()

set_size()

to_xml()

wsiprocess.converters.wsiprocess_to_yolo

Converter to YOLO style.

wsiprocess_to_yolo is convert helper which convert the wsiprocess output for YOLO object detection format. Only available for “detection” method, but works when extracting patches and after extraction.

class wsiprocess.converters.wsiprocess_to_yolo.ToYOLOConverter(params=False)

convert()

get_image_paths()

getargs()

make_images()

make_labels()

make_paths()

If ratio has only two parameters like “8:2”, trainval.txt and test.txt would be generated. If ratio has 3 params like “8:1:1”, trainval.txt, val.txt and text.txt would be generated.

makedirs()

parse_ratio()

read_result_file()

rename_path(path)